NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257157_1034158

Scaffold Ga0257157_1034158


Overview

Basic Information
Taxon OID3300026496 Open in IMG/M
Scaffold IDGa0257157_1034158 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)842
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005677Metagenome / Metatranscriptome393Y
F085985Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0257157_10341581F005677AGGMNRCLAGFLVCSMLVVSGVRASDNWVQLNNTHGWSISYPASWEAYVMQAPDSGPELSIRESDNVNFDGPKDCYERKARCGHFQIYSASTTPQAELKKYVDEETQNQKIISKEAGQLDGMPAYFIRLPEDQRLVIVKSKSLIFHISYGPNDHKPTDKTLEEIFDRMTSSLKFNK
Ga0257157_10341582F085985AGGAGGMRKMIRLIMFMYLASAVTNLYAGPSEKRFEGEWVSHKDVDFGIHLHQDGNQLTGYHSAVTKDGSRTDTAVDGEG
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