NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257157_1070846

Scaffold Ga0257157_1070846


Overview

Basic Information
Taxon OID3300026496 Open in IMG/M
Scaffold IDGa0257157_1070846 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)597
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008956Metagenome / Metatranscriptome325Y
F040663Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0257157_10708461F008956AGGMSAPKFPWTPEKDGLLRSMGAAGESTAAIATLLKRTPDAVRRRARLLKIKLARSPPGLKAKGK
Ga0257157_10708462F040663GGTGGLKEDRQLIQMAASSATLEEAAAIFRTSVETIERKAKRLGIKLKGKRPKLGLKAKK

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