NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247605_1110864

Scaffold Ga0247605_1110864


Overview

Basic Information
Taxon OID3300026503 Open in IMG/M
Scaffold IDGa0247605_1110864 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 91R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)667
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023754Metagenome / Metatranscriptome209Y
F023856Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0247605_11108641F023856N/AYMGRTGKMRCRACDKILEDSELTRKDTHGNFLDLCGNCLSASANSGVDPDTMNYYQYEVFTDEDKCDTLY
Ga0247605_11108643F023754GAGGMKQPENDHTKMFGNDGPIGNDAEIIVYYEQHGPAEPVLRI

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