NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257161_1005568

Scaffold Ga0257161_1005568


Overview

Basic Information
Taxon OID3300026508 Open in IMG/M
Scaffold IDGa0257161_1005568 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2177
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020982Metagenome / Metatranscriptome221N
F041239Metagenome / Metatranscriptome160N

Sequences

Protein IDFamilyRBSSequence
Ga0257161_10055682F041239GAGMREPGLGLDVWWGEREYKACGASLECRGRYIVGKLFDLDTRMLQTAWLAAFGRRLLGPPEIQAHEITRSQWQLILSHMGARADEIVDVQTRMGRS
Ga0257161_10055683F020982AGTAGGMTRRHFMGDRTYKGVTYTLQLEAVEDGVFKAHARLLPSGPEVSFVDEASDRALNQAEAEIKQIIERREASAVVRDRLPERKYRDVTYTIIVRTEATRVVTEVYFIRTNAVQRRPGPGTFFALFQGKTRERAIAQAERTFKAKIDEEHAGARGRKV
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