Basic Information | |
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Taxon OID | 3300026508 Open in IMG/M |
Scaffold ID | Ga0257161_1005568 Open in IMG/M |
Source Dataset Name | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2177 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oregon | |||||||
Coordinates | Lat. (o) | 44.23 | Long. (o) | -122.22 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020982 | Metagenome / Metatranscriptome | 221 | N |
F041239 | Metagenome / Metatranscriptome | 160 | N |
Protein ID | Family | RBS | Sequence |
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Ga0257161_10055682 | F041239 | GAG | MREPGLGLDVWWGEREYKACGASLECRGRYIVGKLFDLDTRMLQTAWLAAFGRRLLGPPEIQAHEITRSQWQLILSHMGARADEIVDVQTRMGRS |
Ga0257161_10055683 | F020982 | AGTAGG | MTRRHFMGDRTYKGVTYTLQLEAVEDGVFKAHARLLPSGPEVSFVDEASDRALNQAEAEIKQIIERREASAVVRDRLPERKYRDVTYTIIVRTEATRVVTEVYFIRTNAVQRRPGPGTFFALFQGKTRERAIAQAERTFKAKIDEEHAGARGRKV |
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