NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257161_1011335

Scaffold Ga0257161_1011335


Overview

Basic Information
Taxon OID3300026508 Open in IMG/M
Scaffold IDGa0257161_1011335 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1619
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052094Metagenome / Metatranscriptome143N
F060889Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0257161_10113352F052094GGAGMRIGFPGTGTAGRHLRPEVAGPEHEVPPEPDMMDKDTAELAYRRGAGIEVTLLWHRMSGALTVSVTDAASGASFELPVAADEALAAFHHPYGYAAARGVAY
Ga0257161_10113353F060889GGCGGMSELRAQAAGQLRGRGADWQFERRQGVVAEELIAVAAGLRGARPGQSVVIVIGSSSHATHPMVGSVAVSLARHSPVALVIVP

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