Basic Information | |
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Taxon OID | 3300026509 Open in IMG/M |
Scaffold ID | Ga0209809_1008356 Open in IMG/M |
Source Dataset Name | Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5142 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming: Yellowstone National Park | |||||||
Coordinates | Lat. (o) | 44.963 | Long. (o) | -110.715 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F049663 | Metagenome / Metatranscriptome | 146 | N |
F062520 | Metagenome / Metatranscriptome | 130 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209809_10083562 | F049663 | AGGGGG | MQSSLNNREYASYRLTEYEKAYSNQDTYEQATLQRVFSALPGTATTRGFPNYGVVLQLASLLANVSSFSGFLTIEKTIEQPNFVLHFLDLIGTNVRDRGQTTPVFPTVGPTRYDNSAYGLQTYTTSPTTPPPPFTINNDTFRAAAGIQTGIAIPPIMPYTIKIVVKAYTGGSLVATEVFTDNGNGMLVSLGVSSGSITIDPATPIPHIVRYGNPSLLPQSAGWDFTINSIQINGPTGSQLVAELSFAFNYTEPIYYPGQEQDERFTLNLTRVITVNTKPAKLTIELNKQELAAISKSMSQDLQPVIVQRIGEIYNKMVNRYIVRKYIQRFVTDTVNYSDFVVIDVGSPIGGPGGATTPDSTYNQYIPILDRMRGGFEKVRQELHRKSFIANKPTALLCSPKLAYFLARSIMVEQSLWVEEKVTYINDLFGYYIGIPVLIHTELEALDSAFETWARTPNTTPPRPMAGMSNYVTAAVGFAVAILPDNNLAPMVRATFLPPTNTPTVANFNNPLQEAFSMFYQEEVDVVAPELVVPFAVTNMPVS |
Ga0209809_10083565 | F062520 | N/A | MCFDNYNLMANRRFVAVVAAVPNLKVDELKRLPTFVDERTIPDMGGNLKTWRWTNNPELYEIYYNEAGILRYHYFTDKINNEAIRVLIDFIRNNKIDANVPNNAFINVSYVFSTTVNQSPDLYGAIIAPAMFLERNNVGLTRGMTSYGFKIANQTYDLVLKAMWESVVIHVELSVVYNTQSVVGLDTVLPHMLEVLSNEYGALSNRIFASAGAVA |
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