Basic Information | |
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Taxon OID | 3300026509 Open in IMG/M |
Scaffold ID | Ga0209809_1009910 Open in IMG/M |
Source Dataset Name | Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4520 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming: Yellowstone National Park | |||||||
Coordinates | Lat. (o) | 44.963 | Long. (o) | -110.715 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F062487 | Metagenome / Metatranscriptome | 130 | N |
F079732 | Metagenome / Metatranscriptome | 115 | N |
F091520 | Metagenome / Metatranscriptome | 107 | N |
F106198 | Metagenome / Metatranscriptome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209809_10099102 | F062487 | GGAG | MLLKANKVLNQSPTYPNAIRFGANRTTILIEAAFPYDRDIFTTTGGDIVSAVLPITGLSPYNGVLPIPPAEPVFLELPDPDDSRLDSLEKFLVWCCMQYKVGLNRFTNLGDNISVLFFDEQETGGYPTLRVRVNLPYSYTAYCCTGSIVRAVYELFVDNPCGSGVLSIDGRVILFDNNVLVDLGLIP |
Ga0209809_10099106 | F079732 | AGGAGG | MPLMDATKMIEEYTTDFGTKVKNLGIKILEGYADKVSEYTERTEENLCPSGNLFQPRALIATFEDGTKIKYPIGDRSNLVARARELLSNGAVCIDYEGEYWPYVPSTLILGISYRSTPLGGFTNDGSKTTGTFNYQSDILGTVVQPFAIESEPAGLVTTAIACLSNIVYGSGFCTGTRSLNIKARRFRGKGLIAGTTRKTYSRDIKMSSPNPTNCGAANAPNYYCLSYIGESIKNLHLLLPES |
Ga0209809_10099107 | F091520 | N/A | VASYVGNYINDVGIQYRNIVLNTYFYDNGNRTFTTYDRDEMYLPTVFKSNTIRLSNERATCQIEYSTLRVAQCYISDNVYYEIPCPFQGGTNEFIAFFTELNNNSMFRLVNLRGENIPYGYYLVLSSIIR |
Ga0209809_10099108 | F106198 | N/A | MSNNLSIQEIIRNRHAVKGKQYLMLYDTDFNTQLLIRQRFYFVPGNPDVFTPIPPVIEERLRPLNPKLGVPTALPFEPRECTACFDNPQVQQGFSEYKVFIPFRPTDYKLKQSIKEIMQLPNVSRVKYS |
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