NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1010736

Scaffold Ga0209809_1010736


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1010736 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4259
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027857Metagenome / Metatranscriptome193Y
F029994Metagenome / Metatranscriptome186Y
F040491Metagenome / Metatranscriptome161N
F079295Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209809_10107361F079295N/ASAESAPQVVQFLHPQNKEKEKKEREGARSSRALSHSRESSNGKTSDYLDHALDRLDGRDPAERTIRAWSLPPHLEAQCLAFARVFEVAPTRGDKKRWAKAAETLHELRCDEARLKAARDEARKAGLICTWPGAIVNLSAIRSVQNEYELVYDEERGGYVRKPKRN
Ga0209809_10107363F029994GAGGMLVNFPGYRNDIPVVEGRPLLFVRCRRCGYTTVARSPGAATLRGWQLPERWPYHAPQLGATVEGVCHSCASAHSR
Ga0209809_10107364F027857AGGAGGMNLKFAYPVRKPYRVTYDSLSALARQGLGKSRLSPAEAAEVRAAIERHKQRQLAREQAPRDSLAEKGRWLRRMKERLQDEVWTVLCRHYRLPYSRWVEKAGTELEIKFGAPNVHTSQYAVWHRKHPWRATELWITLTIPFSWRSSVLAAGLADAGGLLTLAAEQVAQDAWQASWLVQGRGYDFRVESGYIVRCADGTYAHARTLQHARAIADKRAKAWAERIQSEERKRAEAQAQARLRELRDQLASMTREQIADAFGDVPISVQDSTRAGNCPTGTRQWCERWAAGRTSGTVRDVIETGAPLDEHLLRALAVAIARAK
Ga0209809_10107366F040491AGGMDISQVQAFLRYIAELPEVQFIAASVLVNTALAVAASIRNSDFHLPALANFLWRHLLPYVVAYVSIRIAADELGLQAVAAATWIIIQASLLGRIAASLHELGIPMPDSLAKLLRKDH

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