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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026509 Open in IMG/M |
| Scaffold ID | Ga0209809_1012857 Open in IMG/M |
| Source Dataset Name | Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3738 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming: Yellowstone National Park | |||||||
| Coordinates | Lat. (o) | 44.963 | Long. (o) | -110.715 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008994 | Metagenome / Metatranscriptome | 324 | N |
| F026013 | Metagenome / Metatranscriptome | 199 | Y |
| F040512 | Metagenome / Metatranscriptome | 161 | N |
| F068330 | Metagenome / Metatranscriptome | 124 | N |
| F076974 | Metagenome / Metatranscriptome | 117 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209809_10128571 | F026013 | N/A | SKNCPEPANNDFIIIADSAGNVRHTRMREAVFHNLLAGSPIVFPNLPLVTLQPPNTNTGTIDSAAFTNPRSCYPVFVKGSLAGLLQHSFNQNNNASIAIARINFLRDLISRIDNYNTPGITNTPLTSHAWRNQAVSAGGFSSERVVDLGVGIAPSSTVTFNREIIMQGATNFYYVTVENWNASFNVFAL |
| Ga0209809_10128572 | F008994 | GAGG | MRVTRFAIDENGRALFPDYFIVDDNTRLALAMYSANINVQTIVDEGLAQTPWLSTQWPGRTVSFNEWRDAFARNGHSFPQYHAQIGERIRLSELVDINRAFVELFMNGVDLTDPLNAQTHRELLTERNVDLFDFLK |
| Ga0209809_10128574 | F040512 | AGAAG | MFDLLANATVAGLSVVSARVLEQYNWFQRLAPETKRLIAVAIAAFIALAMHMIGAIAQNAEPQSVKAAFSTALAIVIQQVYHALTKEDAQ |
| Ga0209809_10128575 | F076974 | AGG | MDHVKRRRGRPRKPATLEIDEFFAVLELLVENAKRHHMLESILVTDGKLKVAFCVPLFGVTERLLLSKRDRLAESQSPTQLRMPL |
| Ga0209809_10128576 | F068330 | GAGG | MKMNDKLINDKLMKKLSQLAQPEVLIKLGIGLFLFALWTALYELGMRYNQGAGLSMIVATGMVVVLIAHGVMACQSLPQMRLAHGSAFALHMVIAIALSAFYVLSKAPELERQVVNLIGEFVTLGRTFYSALFGIAIAISLSAHIVSMASRNPVSGSQQAIASLATNIAIVLAIITSSIHLYQFGAEIAKLDLLSRLSATIMADISFIAIKSNIQHQIERRQKSNRYDYFDLIVWAVFGIVVSVYLILINSFVVRYTAGINDSGSLLSLVVSLYGMSPTVLLAGLAALTVLTKVVDRETAPKSGARLDEQFSANGVANRQSVKM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |