NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233395_1161638

Scaffold Ga0233395_1161638


Overview

Basic Information
Taxon OID3300026511 Open in IMG/M
Scaffold IDGa0233395_1161638 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)519
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026392Metagenome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0233395_11616381F026392N/AMKKNVMKKILLILFLSFISFNNLSFSEEYKLPNIRPKDLMNDGYVLHSITPISEEGPRVMLYTFIKDKTKIVSCVIELFDIAGEFHTCYNVTN
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