NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247590_1040277

Scaffold Ga0247590_1040277


Overview

Basic Information
Taxon OID3300026513 Open in IMG/M
Scaffold IDGa0247590_1040277 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 51R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1188
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001508Metatranscriptome680Y
F040974Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0247590_10402771F040974N/APAGTWPGDKIPPPAPAVACTMIMACMYFLVYAGVQFSRTWTQFTGSKFTKFENSMMIAANAMNFAPMLSVLFIGARMRALQMDPVNGARQKWAQNCFFMCTYATLAQVLISIAVTLVLSGTADTKQKVEGDVVF
Ga0247590_10402772F001508GGAGLGAILTVGRYLIMFCIYVGFSCVIYSIFTIEHPNGPQYTPPISVTMQCVINLTFQFFFIYLMIFICVTIDEFTGMKWQLLINTMENMKGTVAYCPMLAILFVGTRMRALLITNNKGAPQGWAQDGMYMATWAVLIQFLFGLLVPICTGTATPCDEDGTPEYKPANPIALYCVLALKWVTYIFLYGGVIAVVTAVYTMTPETANGRGSVPLVGDYVGEPVGVNDIPNPTF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.