NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257158_1014198

Scaffold Ga0257158_1014198


Overview

Basic Information
Taxon OID3300026515 Open in IMG/M
Scaffold IDGa0257158_1014198 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1271
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049120Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0257158_10141981F049120AGGAGMTCHIQIGDDPTIWWLAEQIQPSQLTQPLNVLSWYPIRGNLVLSPKAAHVAIFAPPPVLVPTPLSGPGGLYLPTSTGPSAGHIGYELGGTVDPDVLAGQIQALMRNGQRQTITLGGAGGTLVLNGATLSFAVTGPPAIGGPTPHG

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