NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209690_1037954

Scaffold Ga0209690_1037954


Overview

Basic Information
Taxon OID3300026524 Open in IMG/M
Scaffold IDGa0209690_1037954 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2251
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012007Metagenome284Y
F086886Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209690_10379543F012007AGGVEQPKNITAFSGMNNELRANVTVSEPGVGASNIRFELLAMNNSQTCSPSPRPPTVLVDQTVANKSFNIPLKASGTYCFVFDNQGSQSSKTVNISARVLGSTEKVLIARDGSANTVGLGLGALGLVVVIYGYSRKSIIPWE
Ga0209690_10379544F086886N/AGSVRLIDAHPGGDLNDAPFGPCNSPCVSDNTFSDQANFVKVIVTTTSLTSYSVLVDRTSAPRLLLQINTPSQGVSVTIDGANWTSDASNQLRLPVRYGPHTIFIQPQIPVSIGSTTIQLGLTESFAAWDDGSTSNPRWVSVVKDSVLTASYRVVILGVVVLAVTFHRRRHQALGKAKGSATYSSPEPSVTQLGNPSSPTGSFPGNDALSGVPVDNNNEPKGS
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