NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209690_1042499

Scaffold Ga0209690_1042499


Overview

Basic Information
Taxon OID3300026524 Open in IMG/M
Scaffold IDGa0209690_1042499 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2087
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002331Metagenome / Metatranscriptome569Y
F005023Metagenome / Metatranscriptome414Y
F047850Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209690_10424991F047850AGGAGVIRSFVRRGSVLVLALALGACALTLDSTHLGVRASLAGAAQRPDSGTPFRVTKHAIYLLLGLVPVAQPN
Ga0209690_10424992F005023GAGGMKRTALTLALGLLATPVAAQWLGEPMWNDPTAGTGFTIYGDYSRPNSNAGGGTAFGGRVALGAGIFTLTGGVSSWDPDLVSQRLLSVGGTAGFRLIGGSLIPVAVNLQVGGGHSFEITSSTTTLPLQTMLHAAVGLSVPLPTPVVSIEPFVSPGIRYHHYSNVAPGAPDHEVHFGWAIGGIVGVGPIGIHVAYDSEKFDDGTTHGVLGIGANLGLRP
Ga0209690_10424993F002331AGGMRAAFTVALSAFLATPAAAQWLGEPVWNSPKGGTGVTISGDYARPNSDYGSGNTWGGRASLGIGTLTLTAGVARWKPDLATEGFTSIGGNAAFRLIGGSLLPFSVNLQAGAARTDSANSTPAQTAVTGAVGFSVPLPTPGISIEPYFSPGIRYHSSGGTNTTQFGYVFGANLSFGLVGLHLAYDNERLKGGGNRGVFGVGAHLDLHLPLGM

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.