NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209059_1002033

Scaffold Ga0209059_1002033


Overview

Basic Information
Taxon OID3300026527 Open in IMG/M
Scaffold IDGa0209059_1002033 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9245
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019196Metagenome231Y
F019884Metagenome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0209059_10020332F019884GGAGGMVSAFRCRSLSKTQAGYTVTELIVSTAIFSSISLGLLMGFTSLERNYVATSDFSLNHADEMRISDYMAMDLRRAIAVQPAENDTTIFIPAYYDQTGTPQTPALDGQGGVFYGASGSSVRIHYYLMAGTIYRQQDSAPAQPLAVNVQDFVFDVTDAGKVVTTRITFNPTFNSGGASAAATTATAFYNTTLLRNSRTDIQSSVY
Ga0209059_10020333F019196N/AMRRHLTTEPTAFALIECTIATAISAMFLGSLFLMNSSAMDTIRMARESACASQVLQQRIEAMRIANWHQVTDANWLLTNLLNANAPGASQLKNMSETLMLVPYGSTTVGNTQLNRANGAANIVANNSALLGENAVKIIWTVNYTAVPNDRIISRQIVVILAKGGVAKW
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