NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209378_1002377

Scaffold Ga0209378_1002377


Overview

Basic Information
Taxon OID3300026528 Open in IMG/M
Scaffold IDGa0209378_1002377 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13016
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000484Metagenome / Metatranscriptome1088Y
F001801Metagenome / Metatranscriptome632Y
F011376Metagenome / Metatranscriptome291Y

Sequences

Protein IDFamilyRBSSequence
Ga0209378_100237713F011376N/AMSAPPPAVAALAWAVAGPPILIYGATRIRRGKVALHVTLMSVSAVIEISVVVGFSFLMVPSPRRAALVALPFFKIHLVFAITALAGLAWQLTSRAVARLRPLHRHTGPYVVLAWCLALLTGIYNYVFLYVMSFP
Ga0209378_100237714F001801GAGMKTFLRHLVLCSLPLVFATGSGHYFTTIQGSCGAMVGALFSGKCAGRQRQYLARFQLGGGAAGTVIAATLGAWLELRRRRAVQRATDEQPTTPVGEPS
Ga0209378_10023777F000484GGAMKPVAWAGLCLLGACAPTNPCSAAAMHLQTRYAQRYLAHWVVARGDTLTLPELGDRFKLTDVILDSTRVVVGRSCHFRGTLVFRVPRDTLPVTWIGYPEQALVYGWPAALGPFAGIGATRVGDSLVGAILFDSRLGVRARPGATARFVAGRARSSSESGIFFRRF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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