Scaffold Ga0209378

Basic Information
Taxon OID	3300026528 Open in IMG/M
Scaffold ID	Ga0209378_1005869 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026528 Open in IMG/M

Scaffold ID

Ga0209378_1005869 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7933
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (58.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

7933

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (58.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006214	Metagenome / Metatranscriptome	378	Y
F006981	Metagenome / Metatranscriptome	360	Y
F064573	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209378_10058693	F006214	AGGAGG	MALPLLLALLQAVPPATAPVQNPVGSVAAWTLHFTGDVRWQQVTPAGALLVSTDAALAGVDVERGQIAWQKPELGGLPVDSVRMVEGSLLMEAAKPGLSLIFDPVTGTVLFDSRRLSLTRVVTRRVLPQSGTLLVHGQRASGPPVVALYDLATGNQGSCGWHHPRPHSRCCRPVPR
Ga0209378_10058694	F064573	N/A	LHPTFGERFTDAAGAFAFEGTTGGSYLLSVRQIGYAPLDTQLIIAGDSATVVQIALRHLAIELPPVTVAGRQCTNPGRPDSSDAALLAVFDQLQENARRYELLADSYPFHYDLELALREVNQRGDTGRPVVRRLQFTSDDNHPYAVGRVVEPAWGPWGSPDNMLVIHSADLQDLGNPNFIANHCFRLAGRDTIGGETLVRINFEPATRIGSADMAGAAYLDSITYELRYTETSLTRPEQSALANVRAMRFRTRFRNIARGVPLQDSLTAITTYRYGRQTKIDTQRTVEVRFRRQPPPP
Ga0209378_10058698	F006981	AGGAGG	VNMDGYARIESLAKRLGNAAAGRLDVDATARKVVERLREQPVRRALWIQQTWLQIAAALVIVVGGAVVASRLTQKGHPAVSAHAAHFVADDLGDLSAEELRGVLAGFDEMVGSNSIAVPEGSTDLRELDAHQLRAVLRSLEG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209378_1005869

Overview

Ecosystem & Geography

Associated Families

Sequences