NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209378_1041375

Scaffold Ga0209378_1041375


Overview

Basic Information
Taxon OID3300026528 Open in IMG/M
Scaffold IDGa0209378_1041375 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2322
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051833Metagenome143N
F064596Metagenome128N

Sequences

Protein IDFamilyRBSSequence
Ga0209378_10413753F064596GGAGMTRTASVVWSVVEIIGALFLLFIAAVFFIVGIGFATAVPHNLDGDLGKGIFSWLIAIAMTSIAIVLYRDSIRRLHSLPMAWSVVEIILAGFLLFCAGGVAILGFGVAEGGPHAFPGDVRAGMVCWLTALAMTIIAIVFFRRSSRRLRSLRELRLHESELRPELGKR
Ga0209378_10413754F051833GGAMRWKLLVSLAITWFGLGITGLFQHAGIIPLDTVLEVLPAMLFQCTGNCVDGFFVDSAHGPPFLTVPGILLVYVLPSALLAWWASRKMRARTPSSSTGHVGEE
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