NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209806_1000599

Scaffold Ga0209806_1000599


Overview

Basic Information
Taxon OID3300026529 Open in IMG/M
Scaffold IDGa0209806_1000599 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24692
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014368Metagenome / Metatranscriptome263N
F016387Metagenome / Metatranscriptome247N

Sequences

Protein IDFamilyRBSSequence
Ga0209806_100059915F014368N/AMTQIENALKAETRRSPDTVTRTFRIDRDVDRKMEGLSSEGRVSMNQMANKALRRYVEWEVNAEKFGTVTTSASTIRKFFDYLTIEQAKEMGSWWGENQAPGIITFWFKKFDFDSVLKALEFLGAQYGRAFTSDYAFDGRSHTLIVKHDMGLKASVFYAEAVKAAFSHLGLGTDIFVTDDQVIAISPPDPAHPLNRSYEGAADLKYPTSATSRPIPKIRKGQRADSDSRDS
Ga0209806_100059916F016387GGAGMTLSPTRTTLQLKPPLVSSSRSVTRTLRLDEDVEAGIVEMAEREQFSFNLLANRALRKLVEWEDKAGKFGFIQVPTSLVEKVFSILTDEEARELGGEAGANTIPEMVLFWFKKFNPENALKALEMIGSYGNAFRLQYTIDGETDTVVLKHDRGPRVSAFYGEMFQSLFKPTGARVEIHETDGQVVATITRPIVNAANSRRDTPLIPSFPGAKNGRNYKR
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Institute for Fundamental Biomedical Research
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