NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209806_1028246

Scaffold Ga0209806_1028246


Overview

Basic Information
Taxon OID3300026529 Open in IMG/M
Scaffold IDGa0209806_1028246 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2806
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017464Metagenome / Metatranscriptome240N
F078517Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209806_10282461F017464N/ALVKGPCSSYTNEEYLDHSKFKASRRTCKPMTDMLKGSQVLQKTYTYIENVTKESRKALMEEFSQNHKGIGINSAPDILRQSVLDWFPRRDPMLKLTHEKTSQGKPGDVRMDFRGETKTVRFKVHLHAVFAVNGQSPNSPAFLKEVNLSVDPREFSM
Ga0209806_10282465F078517N/AKQHYNATGHNIGRTYGSFGSDELAPGHHHAKSLIETLEISCDACGNESPQSERRDYPIHVLLHDRGQWEVCTGQADCECQGYEGKGVRIGVNLSPERIGKERA
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