Scaffold Ga0209806_1043586

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209806_1043586

Scaffold Ga0209806_1043586

Overview

Basic Information
Taxon OID	3300026529 Open in IMG/M
Scaffold ID	Ga0209806_1043586 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2149
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004117	Metagenome / Metatranscriptome	452	Y
F042036	Metagenome	159	N
F084767	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209806_10435861	F004117	N/A	PAQWSAMPLPRHRRHGRADGTLLPFTTTCCISRVAGAFLLFVLLTCPRGSASDPGAAAVDYGPGPGPGALTVSVSETPDAVLLHIRASGDVEPGSVEVRFTGRKAVVLARDAAGRAIRSQPLRLPEPVVEAGSSAAYSADGALVVTLRKQATAQDAGPPGDPEAAAR
Ga0209806_10435862	F084767	GGAGG	VQPETASWLNESRGSFGAAQSRFNDVSSMDGTGAGALFMSAEYAVKAVIVEHYGFLPPSFETHRIVNLSHRIGLWCQLPPALRAHLADIAQLDPNVRYSRETRLRDPPRTYETLV
Ga0209806_10435865	F042036	AGG	MAQKGSQFRAEANPALRTVCAHCGKSIPTEVGHPHPLDAEDRAVWRETWGLVGIENGSPRVFPTCTECYQAGWRPPGSVH

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