NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209807_1010541

Scaffold Ga0209807_1010541


Overview

Basic Information
Taxon OID3300026530 Open in IMG/M
Scaffold IDGa0209807_1010541 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4551
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001175Metagenome / Metatranscriptome756Y
F018903Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0209807_10105412F001175GGAGMRAVIAAVACAVAACGRSNPCSGHQFDRLRRYSLPYAGHWVVVRGDTLTFPDAPPMSDRFRLGDITLDTTTIVVDRDCIFRGQIVFRAPRAETLAVSWFGQPEQAIVSGWPADLGPFAGLSLAPSGRDSMSGTILIDSKLGVQARPGMTARFVAGRAHRLSSYP
Ga0209807_10105413F018903AGGAGLQVYAGSLKLPAMKSILWVVPICLIAACGSSDKSSQTVNRDTLTERQKDSILAGSKIPGARAVGRAMTAADSMSARVHQSDTVARDTTEF
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