NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209807_1014643

Scaffold Ga0209807_1014643


Overview

Basic Information
Taxon OID3300026530 Open in IMG/M
Scaffold IDGa0209807_1014643 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3852
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055300Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209807_10146434F055300GGAMQLVPNQLPPERLLTTMDAQESVIVPDASDSPFVLRGAGTMSGNSRWIFIGALIGAMLLSVGGIIFSRHAQKEGDRFDFPTFIKARTNGLAMPGSGEPPAPIVVQLSADMVRVSAIALGHPRLAVINGKTVTEGDSITLQVPNATLALILRVAKIGDGSIDLSDGKQMFSAQLTIPSPAKPKTP
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