NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209160_1135266

Scaffold Ga0209160_1135266


Overview

Basic Information
Taxon OID3300026532 Open in IMG/M
Scaffold IDGa0209160_1135266 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1176
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018691Metagenome / Metatranscriptome233Y
F085459Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209160_11352661F018691GAGGMRTRLGFALPLIAALLVAGCGGLGSSGAVCPGPTLEPVTKPGGAGESVTYGFLIDRAYTGDAKRSPSYPWPQLPMTALNTVAGALTNLDLRPGDSVFGTWISHNSNDMREIFLPLSQVPKSSAAEYPAKEWQVKVNDIAQAAAAQDAQTVATFIERTQTAIRAASPVQDPVGTDIYGGLAVAGGVFGANPGKHKLVLFSDMTDTVGNPVRPDLSKSDIVVGLYHRDDPSDQGKGQRDWETTFRTLNAQTPVFLPWAATTVDKIVEQLKATGR
Ga0209160_11352662F085459AGGMNEIVALLESLRPILERWYLLLFAIVLVTLLGIPARVLVSSVAALLRVPAVFTRAEIDPPLRRATPTAPYRLLRNLRDYFRPVLDR
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