NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256867_10003835

Scaffold Ga0256867_10003835


Overview

Basic Information
Taxon OID3300026535 Open in IMG/M
Scaffold IDGa0256867_10003835 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6543
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012278Metagenome / Metatranscriptome282Y
F069309Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0256867_1000383510F069309N/AMEITQTNITEFYNLVQDQISKITTQERVDINLVKNIMTNLDYLISSETYESQECHIRYGGDNLEIKMWIFSLICMSWTLMNLTNKVKEGYCHNIDHEHGDPNPRECFDGRKFHYSIYQKCIKSFYDSLAIIEKDLHKYQF
Ga0256867_100038357F012278N/AMGQKSLICIYTNKDRNEFAIGLKEDENFRAMTKEGEFYTRFVDAFDKIVDNENEIDWKQELQRWIDAAKKNETIFVEVDLSKYNVR
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