Scaffold Ga0256867_10007232

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256867_10007232

Scaffold Ga0256867_10007232

Overview

Basic Information
Taxon OID	3300026535 Open in IMG/M
Scaffold ID	Ga0256867_10007232 Open in IMG/M
Source Dataset Name	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4877
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	42.9888	Long. (^o)	-108.3994	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018536	Metagenome	234	Y
F048149	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256867_100072321	F018536	GAG	MKNSVIAISSQYVVITTIVYALLAPIFFEMDNAFGKEENFVGDNNDKITMYSQQIVAETECKSPCPYSGEMCIEICA
Ga0256867_1000723210	F048149	N/A	NSSEQMIISYERSLEENINEGIKTLEYHISSQNYPIVNEMLQLQIETLQWVLDKQNKENSLESLKQIVNFKIKRLEYELKMARRDIEHTSKIVYQLEMLACCKIIINWELQRRTKTTTKEDDISAFC

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