NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209058_1020153

Scaffold Ga0209058_1020153


Overview

Basic Information
Taxon OID3300026536 Open in IMG/M
Scaffold IDGa0209058_1020153 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4390
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020474Metagenome224Y
F029292Metagenome189N
F033381Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0209058_102015310F033381AGGAGGMDEGWRAIVDSQWLRDCMEEWRDWGHLVLRAKWTMDGATTLAEAAARFRERAEELDELARAGFELEQPVNDDYAFIVRPGEESPMRLVEEDE
Ga0209058_102015311F020474AGGAGGVNENDVQDIEIAEPIYECPDCGSLTIRGKWSIEGAKSLTEAACKLRDYAHELEHMRASGLELARPVEADYGIVRPGGVSSPDDLDETDGDE
Ga0209058_10201539F029292AGGMYSRVTDDDLRAYVDEWRDFGYVLVRARWTMEGASTLLEAARRFRDRAETLECLARAGFELDRPATSGFGVIIRPGEDSPLRLVEDDRKRVPM
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