Scaffold Ga0209157_1000477

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209157_1000477

Scaffold Ga0209157_1000477

Overview

Basic Information
Taxon OID	3300026537 Open in IMG/M
Scaffold ID	Ga0209157_1000477 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	34280
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (72.55%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002354	Metagenome	567	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209157_10004771	F002354	GGTGG	LPVFATSVVQVVPPSVDLSILYPVIAEPPLSLGAVQLKLICEEDTDVAVSPVGGDGATARVAADAVLEGEPVPMELM
Ga0209157_10004772	F002354	N/A	VSEYKVEVVAVFATTMLHVEPPLVDLSILYPVMTDPPLSLGAVQLRLICEEVAAVAVSPVGGDGTTARVVADAVLEGELVPMELMADTR
Ga0209157_10004774	F002354	N/A	VFAASVLQVVPPSVDLSIMYPVMAEPPLFGAVQLRLIWEEEAAVAVSPVGGDGATARVVAEAVLEGELVPAEFTLDTLYV

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