NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209056_10002396

Scaffold Ga0209056_10002396


Overview

Basic Information
Taxon OID3300026538 Open in IMG/M
Scaffold IDGa0209056_10002396 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20240
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039075Metagenome164Y
F040019Metagenome162N

Sequences

Protein IDFamilyRBSSequence
Ga0209056_1000239616F040019N/AMSFQVLFHERDVAGSCAECNLRLRTDKTIDRRTPEYYAEFTRQVEASYPDRIQRIFLKTNSVSEAKRVYPVVRRLGYRAKQSSPMLHARLVMVETTRDQAVALIEKLREQGTQVALQDDLHSPPP
Ga0209056_1000239617F039075AGGMFAPGIISLAFYKRRPSRVQVILGLVATIVLSALLGYISPGGPLGQVGSVILAVVGGVILYVVILAVLLYWYQPRHAKPRTQTPTAPAP
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