NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209056_10025791

Scaffold Ga0209056_10025791


Overview

Basic Information
Taxon OID3300026538 Open in IMG/M
Scaffold IDGa0209056_10025791 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5647
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074706Metagenome119N
F084000Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0209056_100257913F074706AGGAGGMDSPQREGDATSGNGMSEDIRPTGWRAWSFEQVLVLGGFVSMVLAVLVLVTSDPSFAVGLVVVIIPGIAFTGLLFWRPRPWTYPIAGVANCLLGIIALPLGLISALANPLVGPVYSSVVLATLSILLALPAGIIGYLRGRTILRQRTLAEGIHSLQGFAAIALVALSIGAIAAGGLAYQSLLAPIPTTGPPYDIAQSASISILAENSRFSPSSFNITAYTTTRITVLNEDDAAHTFTYVNNGTTYSHDLLGGSTTRFFVLFLAPGTVPFWSIQDQSAGMVGNITVNSS
Ga0209056_100257917F084000GGALRGEFGSLWDKRRPEQPLRSELLRARTVPGPTFFSVHCLAGRVAPFHFVYGAAFRRTSISLVGLLLFAASCALLPSTVGDGTGSGISNAAGSYLLTPAGTNNYTLHAYLADLGLPIYRGDTLIYSWRANNGSGPPIYFEIHAHPITGGYFKYYNTTAISISNGTWTAQTTDRYMVYWVNLSNTTRVNLTYSFVLLVAQPDAWPLYIVPAVIVLVAIAGVAAHVRARKRPPPWAEVGGKDSKETQTAGEAPAPRDQK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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