NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209056_10031752

Scaffold Ga0209056_10031752


Overview

Basic Information
Taxon OID3300026538 Open in IMG/M
Scaffold IDGa0209056_10031752 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4969
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000281Metagenome / Metatranscriptome1382Y
F017033Metagenome / Metatranscriptome243Y
F040892Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0209056_100317525F000281N/AMQNPVKDRIAKLRDEIAQISEANRLHLHGGKKKPQGAAGDHERRLQRLQEILDELVALTDWKKL
Ga0209056_100317527F017033N/AMMASLAAATLLWRGSALDLIWALNPRAYKQLAPLGRTVGILFLLLVAALATAGIGWFRRRLWGWRLAVVIIATQLLGDVVNCVRGDLLRGGIGVIIAGALLLFLVQPKIRATFT
Ga0209056_100317528F040892N/ALIDDLAGESPASADYPVGTVVISGDGAGDQTVGSPDVNVLVGWTQVWSAPTGGQAKQQVVAKANRSQASKMHTSPESECEDEGNAETVSPS
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