NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209056_10065003

Scaffold Ga0209056_10065003


Overview

Basic Information
Taxon OID3300026538 Open in IMG/M
Scaffold IDGa0209056_10065003 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3165
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001527Metagenome / Metatranscriptome678Y
F018821Metagenome233Y
F089307Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209056_100650032F089307GGAMQHKKTEVALNHDLHPPVLEEAGARFCERSSRENLEADLRSIVFAAHKLPAQVDPPARVWRSLRLQLEREGLLGRSVKGRLEEQTRFPMFRN
Ga0209056_100650034F001527GGAGMMISSENVLSRQLKPLCSRDNHVMKYELGGSRANTGHLASYHCGSAGCSVRYNSTAGYHVLFGMPGHAYAVDEPGVNTVKCPIHGRWLYRRKNIDAEPRVRWFCGVEDCRYGYIANTKYEWVRG
Ga0209056_100650035F018821GGAMDIDQTKWFLRVFAGGNKLNTVTVSDLYLSGYIGIELLSPGKEPLPTVITEKGKRVLET
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