NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209056_10072771

Scaffold Ga0209056_10072771


Overview

Basic Information
Taxon OID3300026538 Open in IMG/M
Scaffold IDGa0209056_10072771 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2939
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036167Metagenome / Metatranscriptome170N
F047595Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209056_100727713F036167GGAGMRRFTITDVMEGNGQPHPAFTHTATYPVLEVLLPGNGNLPGFLVADDQGRFHLIRMDNCRLGKIEAF
Ga0209056_100727715F047595AGGMDFDIGSNHYRNAAPSIEIEGMPHLSFEHNRRYNEMTLRGFLYDTKGNLVGKIVESSLAMNVQGEFEMRSEPSVVKVLRRETEEVILEVKFLDKNRIQIHKAKLYSIKGRPFEATPKHWKIGDDAPRSGENVDCGANAVSLK
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Institute for Fundamental Biomedical Research
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