NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209056_10078781

Scaffold Ga0209056_10078781


Overview

Basic Information
Taxon OID3300026538 Open in IMG/M
Scaffold IDGa0209056_10078781 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2789
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F004291Metagenome / Metatranscriptome445Y
F046497Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0209056_100787812F046497GAGMAISRGCGIWVWLPPVVLICASTASGQGPAPETAPPLFPGGGLISYNSAFTTRSPMPGISGGVPSTARPTFSHEADFNFTWGFFRDFDLTVLIPITTTRFDITGKPVGGTGLGDSLVLAKYRFYRRDSPRGTTQASVTLGPKLPTGRTNLADANGDLLPASLQPGSGSTDLFLAGNWTYTGLFNIKRLVADEDFHTLLRSQGTQATRLGSDLESRFWLSYRPYESKNVAREWFVGPVLTWLRSQDDRIAGVSKRGSGGDVLLAGMTTYFGVRPGMHVWFGMDWGVAHSTSPLFMPVRRHISFGITQQFRLHR
Ga0209056_100787813F004291AGGAGGMNKKNFGLLVLLGSMVVVPVAQAQIKHIEMRVEGMT
Ga0209056_100787814F000092GAGVKQHLGRQSGVQNVEVSLRDGKVDVSPKEDGQIDPVQLLKATYDSGVTAAEMDMTARGKIVKDSSGSLALQVAPNRSFAFAPNELSKGLESLAGTQTMVTVLGQLYKKPAGKKKADLAAPLKMLILEVQKKE
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