NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256872_10014818

Scaffold Ga0256872_10014818


Overview

Basic Information
Taxon OID3300026539 Open in IMG/M
Scaffold IDGa0256872_10014818 Open in IMG/M
Source Dataset NameMetatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_08 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3143
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameCanada: Alberta
CoordinatesLat. (o)49.6935Long. (o)-112.8418Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057035Metagenome / Metatranscriptome136Y
F064301Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0256872_100148182F064301GGAGMAKTKRITARTVSLPTKVPPVWQIGMLFPDGKKISKPKCTLNEIFNTYFLNLDKYLNKGYNAEQLLELYQKTYYNKGVKVAIHYIDSWGHIWKGKVAWPRESKFIEFLNKRLNENYS
Ga0256872_100148184F057035GAGMTEKEFLEKRTPIWLEGEDLHISTPSASDRNDMHVFLCKKYGYNALFAIRGYYWPGSHVQLYIGEYETPNCTILVTNYIFQYFPDIKYIGFGCHIGNPGEIWKPKVVVARNINCLNSDLLNKQAEESI
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