NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256872_10228236

Scaffold Ga0256872_10228236


Overview

Basic Information
Taxon OID3300026539 Open in IMG/M
Scaffold IDGa0256872_10228236 Open in IMG/M
Source Dataset NameMetatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_08 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)868
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameCanada: Alberta
CoordinatesLat. (o)49.6935Long. (o)-112.8418Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013386Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0256872_102282362F013386N/AMMSQTSANVDANVNPVYADVIQVNRFDLLDADHNPEMWKGWRNWSLQDIVKMLKDMAKPGEVHGVTAVVMGNIVLRKLLEAAADPNVPFEVIEETVHTALETPVFCRKRSVLTGFKTFGRQAVRDFFKEFVKRGIDNARYYELIYTMLTHRLNNDDFPLGFGMSEQDGFNDEVLAKLPLEMQKQLKSYTFYQDDKYTDRRLCYSLLTGESVAM
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