NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209376_1004604

Scaffold Ga0209376_1004604


Overview

Basic Information
Taxon OID3300026540 Open in IMG/M
Scaffold IDGa0209376_1004604 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11924
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047502Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209376_100460412F047502GGCGGVQVRPAGVEAETARLTVPVKPLTAVTVIVEVPEAPARIWAGLTAPAAMVKSTTWKRIVAV
Ga0209376_100460413F047502GGAGVTLAGNVHVRPAGVEADTARLTVPVRPFTALTVIVEVPEEPASIWAGETAPAAIVKSTTWKRIVPVV
Ga0209376_100460416F047502GGAGVTLAGNVHVRPAGVEADTARLTVPVNPLTAVTVIVEVPDEPARICVGDTAPAAIVKSTTWKSIAAVVRVRAPSVPVTVTV
Ga0209376_100460417F047502GGCGGVHVKPAGVEAETARFTVPVKPLTAVTVTVEVPEDPTRICVGETAPAAIVKSTTWKRIVPV
Ga0209376_100460418F047502N/AVQDSVAVCGDVPKVTLAGRVHVRPAGVEAETARLTVPVNPLTAVTVMVDVPDAPANIWAGRTAPAAIVKSTTWKRIVAVV
Ga0209376_100460419F047502N/AVHERVAVCGEVPKVTLAGNVHVKPAGVEADTVRVTVPVKPLTAVIVTVEVPEPPARICVGDTAPAAIVKSTTWKSIAAVVRVRAPSVPVTVTV
Ga0209376_100460420F047502GGCGGVQVRPAGVEADTDRVTVPVKPLTAVTVIVEVPDEPARIWAGDTAPAAIVKSTTWKRIVPV
Ga0209376_100460421F047502GAGGVTLAGKVQVKPAGVEAETARFTVPVRPLTAVTVTVEVPELVAKIWAGDTAPAAIVKSTTWKRIAAVV
Ga0209376_100460423F047502GGCGGVQVRPAGVEADTARFTVPVNPLTAVTVIVEVPDEPARITVGETAPAAIVKSTTWKRIVAV
Ga0209376_100460424F047502AGGCGGVRVTVPVRPLTAVTVIVEVPEAPARIWAGVTAPAAIVKSTTWKRIAAVV
Ga0209376_100460425F047502N/AVALHDSVAVCGDVPKVTLAGKVHVKPAGVEAETARFTVPVKPFNAVTVMVDVPEDPAKIWVGDTAAAAMLKSTTWKSIAAVA
Ga0209376_10046046F047502GGCGGVQVRPAGVEADTARLTVPVRPLTAVTVMVEAPDPPASICVGDTAPAAIAKSTTWNRIAKVVWVMLPLVPVTVTV
Ga0209376_10046048F047502N/AVHESVAVCGEVPKVTLAGNVHVRPAGVDADTARFTVPVKPLTAVTVTVEVPEDPTRICVGETAPAAIVKSTTWKRIVPVV
Ga0209376_10046049F047502GAGGVTLAGRVQVSPAGVDADTARLTVPVSPLRAVTVMVDVPDAPANIWAGRTAPAAIVKSTTWKSIADVVWLRAPLVPVTVTV
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