Scaffold Ga0209376_1052422

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209376_1052422

Scaffold Ga0209376_1052422

Overview

Basic Information
Taxon OID	3300026540 Open in IMG/M
Scaffold ID	Ga0209376_1052422 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2338
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019626	Metagenome	228	Y
F048895	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209376_10524222	F048895	GAGG	VVCKGCRRTLVTVERLRDPEIELVVDHLRACSASEPLGDTPMLGETMSRVRVAPVERSEQ
Ga0209376_10524223	F019626	GGAGG	MNRHPSYVLALSNDDLILNRLKERGHRFRRSLGVSVFGCFEFAVLVNRLRTADPSEVARCLRLIESVADALRQTDDGDCVKCLVKLWLFAARIAGEAFPAHSHRYLCLAKSLVPPRPILWSFTDLREEVDWYIKRIGADGGILA

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