Scaffold Ga0209156_10000808

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209156_10000808

Scaffold Ga0209156_10000808

Overview

Basic Information
Taxon OID	3300026547 Open in IMG/M
Scaffold ID	Ga0209156_10000808 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	26458
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (65.38%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009593	Metagenome / Metatranscriptome	315	Y
F073355	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209156_1000080817	F073355	GGCGG	MTTMRADKLEEQVEAALMERQHLLPKGLAAREVASRIARCYHDRADGASGFWIARARWAAADGRPTGRAVYEVVRADGRVGVWDALTLDEGELIADTLTQLSL
Ga0209156_1000080822	F009593	GGA	MLPTRLSVRLAWTVVGAMAALACGFADVFRPAGPESVTIIYVGDSVLHRDSTVPFSVAVEAGGTPLERPRLTMWSSDPSVFDLTAGRDSLAAKSIGAATLMIRLESSIVTDSAPTLAQSIKVRP

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