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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026548 Open in IMG/M |
| Scaffold ID | Ga0209161_10000003 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 183344 |
| Total Scaffold Genes | 175 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 120 (68.57%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001375 | Metagenome / Metatranscriptome | 711 | Y |
| F008298 | Metagenome / Metatranscriptome | 335 | Y |
| F010456 | Metagenome / Metatranscriptome | 303 | Y |
| F011070 | Metagenome / Metatranscriptome | 295 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209161_1000000320 | F010456 | GGAGG | MRKLTSTLVAAVALVALPHVALAQRTRVAAASGPKNEIGVDLGAAYSHTGSGCTANCGSFGVGTPVDIRWGFLANGPLSFEPRFTFNWLTGGGGHVLSFDPDLNVIYRMSHATARRGMYLTGGLGLAIASASAGTVSNSATQLSLNGGVGKRIPVESNAWRLEGFLRYNFKNSGKGIPSSFNIGARVGMSFWR |
| Ga0209161_1000000323 | F008298 | GGAGG | MKRMATIAALIAFGATPAVAQWAGMPVWNNPKGGTGVTIDGDLGFPTTNGGKGTAYGARATVGLANISLTAGLSNWKPEGYSSSTTSMGGTAQFKVIGGSLIPVAMNFQLGAGTSSAVTSGLITQPKTTMIVAGAGISVNVPTPGLSIEPYLSLGERWNKASGFSTQSNFGWIIGANLGFGMMGLHLAYDSQKLGGATRGIIGVGAHVALKAPIGM |
| Ga0209161_1000000357 | F011070 | GGTGG | VSDEPIKDPLALGLGSLAAGAGFGGACLTAAQIVAAILRGDLEPNVYRDTAPDPLLAGVIAAIGVGGAYGWYRGVALDNIWQRGVIAVLAAIGAVLIGFLAAPLDRFLGLIGLLVWFLLNILLGILATRWAIKGKGAEGT |
| Ga0209161_1000000374 | F001375 | N/A | MRKVWLLVAFLMACGGGLEPEPICAPSLVGLCGTVRFRGTVPANTENVFIAAYLTFPQTCTDLIANRQPLIPGSVPYTDSLALYSVPLSPGTYHWVLAVWKKPGTLTLTPADTQYLRVGGYYRNPADSTQPGSVTVPDGASAGDVDFVVDFDRLRPATDFVTCTGP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |