NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209161_10000292

Scaffold Ga0209161_10000292


Overview

Basic Information
Taxon OID3300026548 Open in IMG/M
Scaffold IDGa0209161_10000292 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40052
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (73.17%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003580Metagenome / Metatranscriptome478Y
F024993Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0209161_1000029210F003580GGAMGTFLSKAILGLVLLQSPQNPSPDSVRAELWARVAVDSTNGPAWLELGRAYLQRGTDYHSHKKPMTVDTVWAHATLDTAQLAFERAVRFSPGTRTADSARLYRVYAYGELAYVDWESGGTAAATLTWHTLPEGLRIPPVLEELGENLLRACPHQGMLFTAGETDTQAAWYLRFSRGLRPDLTIVPFERWRGDSVLRNRVLRELRTHDPSLRALGQSRAVCASMGFERPPDERTVKWSKRPLVWVTGKETKADRVPAQDFVFAALRLAIDEHETWTAPAVVLYRRAADNVGALCKAFDTFHLGSEVGCH
Ga0209161_1000029230F024993AGGVFLAPVLLLLQATANAELGYVMSLPDDFVAVPALGFTSPDVVGCWAGDNHILLCVQRMHAVLGREHLKPADLPPRSQLMTVKWNGLDIDAIRTDTAQGGGAITVYTAQVPLRREAIQIVAAGPGVRAAAVLATLNQVLGSLKGETNWLSPTERAARLGTIAGWIIGIAIGVLIVRFVVTRRRAQSVA
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