NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209474_10009692

Scaffold Ga0209474_10009692


Overview

Basic Information
Taxon OID3300026550 Open in IMG/M
Scaffold IDGa0209474_10009692 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7838
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030614Metagenome / Metatranscriptome185Y
F071031Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209474_1000969211F030614AGGAGVLIAVCALVVGCGVRNSKPSTAAGSVSCLRSHAFTRVTTNPGAVGFIAGFADHGGIRAASPSWNILTIAFTEGPDAVDSTEEAFRSHAPKSLRPHMSDIMTASGNAVLVWTTTPDPDELDTAQRCLRP
Ga0209474_100096929F071031N/AMDVRKPTWTTSSFLIYAGGLVVLGAAVGALGYLAGSYGDAAFAGWALLVLGVLYAIALAFKRRDRWLAAGIFAFASVIAWGVFVGSLWVWFGWLSTSDGTRFPFHGFSVARLSLELLVLASVVDDLRRFRFPFIASIGVLVGWLFLTDLVSGGGSWSAVVTLAVGLAYLAAGSATGRPSAFWLQLGAGVLIGGSLLYWWHSGDLEWSLVAIVGILYIGIAHGTGRSSWAVLGTLGLVFAAGHFAIEWTRVGIPFLFGGANPASGPRGFVPSLVFAFLGFLLVALGLAVGRRRARLQPE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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