NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209474_10058717

Scaffold Ga0209474_10058717


Overview

Basic Information
Taxon OID3300026550 Open in IMG/M
Scaffold IDGa0209474_10058717 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2721
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011501Metagenome290Y
F023724Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0209474_100587174F011501GGAVFRIELIRGASWQEPVETVDRRECETNSIDAAVAEAKHWLKQTQKTAPARGVTHYRVVSESGTTIGGPP
Ga0209474_100587175F023724GGAMTAFFAGLCLVLAGRSAEAQRSDDYCGALKMLLQSAKDGFAQAQNVKLPGASVCNVEKETRSYGCMWSFEKSAAVSANYQKMLQSVRACFPNVSPRQSHSERGTIHTEYDFGKGEPLIDISRGRPGSEAGDWYSIDIVAP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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