Scaffold Ga0209648_10002985

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209648_10002985

Scaffold Ga0209648_10002985

Overview

Basic Information
Taxon OID	3300026551 Open in IMG/M
Scaffold ID	Ga0209648_10002985 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14114
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000753	Metagenome / Metatranscriptome	906	Y
F022180	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_100029852	F000753	AGGAG	MMTIKASQKIFTYAEVANLTGICAEHLHNFANRHRLGFITRAAEPLGNQAQQRLFTPWDLMVLATLFPRCAH
Ga0209648_100029854	F022180	AGAAGG	MSAMVSYVAPLVPAFPAGVDARWETENRTVWNEQEHASEERELVYEISWIAELGVWRRFLRSQRKARN
Ga0209648_100029858	F000753	GGA	MITVKASQKIFTHAEVVNLTGICVEHLHNLVKRHRLGFVARVAEAAGTKADQLFFTPWDLTLLVTLFPRCTH

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.