Scaffold Ga0209648_10004311

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209648_10004311

Scaffold Ga0209648_10004311

Overview

Basic Information
Taxon OID	3300026551 Open in IMG/M
Scaffold ID	Ga0209648_10004311 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12072
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (81.82%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066170	Metagenome	127	Y
F088328	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1000431110	F088328	AGGAG	MMRSARCVGVTATFLLLMASTALAQSFCSDLDPLVKLAPSGFRSILDDANGGPIESGVTRTLPGASRCWYEKGAEAYWCAWDVPAAQVGSQVNQLASGIGQCYHVQPDYEATLAGDGVVAFVDLPNSVSVYINGVGGMVALSIGGRPTEGGSSGDQTPVGPPEALGPDNFATPSLLTPLPAGPPVPEERAYSPELGREAGGVRTPRDGPPVGPLRGRH
Ga0209648_1000431114	F066170	AGTAG	MVSGIVVGILKEQHSNHIVLTDASRISFPDGLVLEHLPSGSSVTILYSRDSAGEMVVKSITQSATSHLRYLPRPPRQPRY

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