Scaffold Ga0209648

Basic Information
Taxon OID	3300026551 Open in IMG/M
Scaffold ID	Ga0209648_10005361 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209648_10005361 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10967
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

10967

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Laytonville, California, USA

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001792	Metagenome / Metatranscriptome	633	Y
F029066	Metagenome / Metatranscriptome	189	Y
F058867	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_100053615	F058867	AGGAG	VREADRSDKLCAEVAFDRSTTASLGQGDVREKANEDPVLEELKAMGEQGLVIERAREEVIEILEGQNRCAAWFQQAESDAARKFQSLRYRIDESGPQYTLKLQNAAGGWLYQQPYVATSIEDASTGSTITINGKGAFFQLRAGVRIVPKDGGPGGLSASQLLRLDLYLGGTLDAQVTALLHEFSHVAGLLPADGGSGFGAELSTQNTQIVLRHCRGEVEAAGKHKSLFLNPGTGSFHVARVDKSSF
Ga0209648_100053617	F001792	N/A	MPEPTLFRFLLLAALAVTARFLALAIAVPIEPQVPAPLIALFSPGLKLAEPIMPETHKSMAWTFGWFLRIAIAANAAFYFAIFALIAYLADRPRSK
Ga0209648_100053618	F029066	GGAG	MYSAPRNIRAVVLLFIMSSLSGTVALPQAVKFIRRAADPLPLASMLVGRAPCTIDSGSAVSAPYTATPATGDVNSRCDTPPASEPSVNPCSASGPAQTGCHAPRDLVQEELASMGKPGQKILRARERVLEILQTENACSAWFREKDSNPANTFRTLRFAVDRKGEEFILESGNPGDMTIFRNPYVARVFQGDGSYATITINLKGAFFSPMARVIEIQKEGRPWSLRGARVLGVGPYAGDSRHAQILALLHEFGHLVDLLPTDERDQDGKSVQNTGEVLRFCRAEVQSKAKRGALSAAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209648_10005361

Overview

Ecosystem & Geography

Associated Families

Sequences