Basic Information | |
---|---|
Taxon OID | 3300026551 Open in IMG/M |
Scaffold ID | Ga0209648_10013596 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 7108 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Laytonville, California, USA | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002607 | Metagenome / Metatranscriptome | 543 | Y |
F086932 | Metagenome | 110 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209648_100135965 | F086932 | N/A | MSSDSNIRVSLPIGSEQSPFRVAGPGSAENGTKSEARCAMGPKTQTQEACDKTSPSAGLKLRVPDEVRILIVCDDDSITERLSLAFGEAGLISECVKSITAGCESARSGRFQVIVTTPLLRDGSWRRLVDIAAYYDSGFVVILVATTFDIQEWTEALGYGAFDVLDALHELPKAAEIAKRAMWAAYLKGAGPEPGAASPPKAAWA |
Ga0209648_100135967 | F002607 | AGAAGG | VSDMTLKYPLWQNHYLQAMVESRPELLGSKISASEQVVSLRLRQLASTTDDYEEQIALAAALKSLKVLKER |
⦗Top⦘ |