NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10036738

Scaffold Ga0209648_10036738


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10036738 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4252
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005004Metagenome / Metatranscriptome415Y
F006913Metagenome / Metatranscriptome362Y
F094136Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_100367381F094136AGGAGMPSYQNVTPPISLMPGDVGFSFNNEAFPGSAQAGSQF
Ga0209648_100367386F006913GGAGGMAGYSPEWREEMDPETKRAWRRLIREVRENTPIVVRGVASEGKQMPRKLYSALVRGFKCLTNRAKEWELPFGDRKTLVAQLARVRLRSPIYKV
Ga0209648_100367387F005004N/ATGKFLWRPDFRPRLNEWVADFALAGKSALDGPDWASRMVLFRLYYLGLAPYENARHFLGLSEHSWVNWTEQIRHRCGKEPLGRGMFPPRKYFTSTE
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