NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10119695

Scaffold Ga0209648_10119695


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10119695 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2127
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000696Metagenome / Metatranscriptome931Y
F000739Metagenome / Metatranscriptome913Y
F018044Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_101196952F000696GGAGMPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVTAVTQPDTSLQVSITDATAPPNQLPTDLLVPLKIWERPNGSTDDFLEMVDLSQHGGLPSRVQDVTLSVWEWRADGLYFLGATQNMQIRVRYLKAYPDFTDATSPVLVRNSQEAIAYATAAMAGWARGSPLAEKWDEAAADAIEDLVAAAVRREQQSARRRRPFSARSGYTPF
Ga0209648_101196953F000739GGAMWTEMNRLRIWLKGILAAAISGAAGGVLTGFAAVGIDPQHFNLQSGIGATMRIGAAAALINAVIGVAAYLQKSPLPND
Ga0209648_101196955F018044N/APSRGEDEHCFTLEGPRGEFVQLTPTIAEHIARAVEWSRKFPRAKRRGELYDRASREERNYESWGFDVLDDSVPAFHKQPFVTVA
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