NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209577_10150290

Scaffold Ga0209577_10150290


Overview

Basic Information
Taxon OID3300026552 Open in IMG/M
Scaffold IDGa0209577_10150290 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1832
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006720Metagenome / Metatranscriptome366Y
F018709Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0209577_101502902F006720GGCGGMQLRLNDPSYTDRLANFLRSLGQMAIEAGPGQLELDVPATPASRAELRIYLRVWNVLYPEAEVQLDNGVDEDVAGEA
Ga0209577_101502905F018709N/AMKLRLKRLLRPVPHLERDPAQHALLVGIGAALALGAAVGIAWAAGFGRVLHELRHLDPIWIPVAFGMEVAAYFGYVAAYREVARVEHGPRLGLRRAGAIVAAGFGVFVIRGGFIVDRHALEDAGLEPHQARAR
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